Function AlignmentChain.translateTracePoint

Translate contigPos on contig to a position on the other contig without exact alignment reconstruction. The first local alignment that covers contigPos is selected for translation.

TranslatedTracePoint translateTracePoint(string contig = "contigA") (
  in coord_t contigPos,
  RoundingMode roundingMode
) const pure
if (contig.among("contigA", "contigB"));

See also

coveringLocalAlignmentIndex, LocalAlignment.translateTracePoint